论文标题

PRAGMA:互动构建功能性脑部拟合

PRAGMA: Interactively Constructing Functional Brain Parcellations

论文作者

Bayrak, Roza G., Hoang, Nhung, Hansen, Colin B., Chang, Catie, Berger, Matthew

论文摘要

神经影像研究的一个重要目标是绘制人脑,以识别和描述功能上敏感的区域并阐明其在认知行为中的作用。这些大脑区域通常由捕获大量人群的一般趋势的地图集表示。尽管神经影像专家是必不可少的,但人口级地图集并未捕获功能组织中的个体差异。在这项工作中,我们提出了一种交互式可视化方法,即Pragma,该方法使域专家可以从已建立的地图集中得出扫描特定的分层。 Pragma具有用户驱动的分层聚类方案,用于定义不同粒度的时间相关包裹。可视化设计支持用户对如何执行聚类(即何时扩展,崩溃或合并包裹)做出决策。这是通过一组链接和协调的视图来理解用户当前层次结构,评估集群内变体的一组链接和协调的视图来实现的,并将分析与已建立的地图集联系起来。我们通过用四个神经影像领域专家进行的用户研究评估了巴格马的有效性,我们的结果表明,Pragma表明有可能探索个性化和州特异性的脑部细胞,并为功能性脑网络提供有趣的见解。

A prominent goal of neuroimaging studies is mapping the human brain, in order to identify and delineate functionally-meaningful regions and elucidate their roles in cognitive behaviors. These brain regions are typically represented by atlases that capture general trends over large populations. Despite being indispensable to neuroimaging experts, population-level atlases do not capture individual differences in functional organization. In this work, we present an interactive visualization method, PRAGMA, that allows domain experts to derive scan-specific parcellations from established atlases. PRAGMA features a user-driven, hierarchical clustering scheme for defining temporally correlated parcels in varying granularity. The visualization design supports the user in making decisions on how to perform clustering, namely when to expand, collapse, or merge parcels. This is accomplished through a set of linked and coordinated views for understanding the user's current hierarchy, assessing intra-cluster variation, and relating parcellations to an established atlas. We assess the effectiveness of PRAGMA through a user study with four neuroimaging domain experts, where our results show that PRAGMA shows the potential to enable exploration of individualized and state-specific brain parcellations and to offer interesting insights into functional brain networks.

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