论文标题

开放图像数据格式和存储库标准的全球视图

A Global View of Standards for Open Image Data Formats and Repositories

论文作者

Swedlow, Jason R., Kankaanpää, Pasi, Sarkans, Ugis, Goscinski, Wojtek, Galloway, Graham, Sullivan, Ryan P., Brown, Claire M., Wood, Chris, Keppler, Antje, Loos, Ben, Zullino, Sara, Longo, Dario Livio, Aime, Silvio, Onami, Shuichi

论文摘要

生物学和生物医学成像数据集记录了几个空间和时间数量级的生物体的构成,结构和动态。现在,在整个生命和生物医学科学中都使用成像技术,以在临床试验以及动物和人类医学中的基础科学以及评估,诊断和治疗干预中获得对生物学机制的发现和理解。成像的普遍应用和使用提出了一个重要的问题和机会:生物和医学成像数据的价值和最终目的地是什么?在过去的几年中,几种信息学和数据科学技术已经足够成熟,因此现在可以将这些数据集的常规发布。来自15个国家和所有人口大陆的全球生物成像的参与者都同意建立图像数据存储库的建议和准则,以及他们用于将数据传递给全球科学界的格式。这份白皮书介绍了这些共同的,全球标准的观点,用于这些常见的全球适用准则和开放工具和资源的临时建议,这些建议和资源现在可用,可以为未来的发展提供基础。

Biological and biomedical imaging datasets record the constitution, architecture and dynamics of living organisms across several orders of magnitude of space and time. Imaging technologies are now used throughout the life and biomedical sciences to achieve discovery and understanding of biological mechanisms in the basic sciences as well as assessment, diagnosis and therapeutic intervention in clinical trials and animal and human medicine. The universal application and use of imaging raises an important question and opportunity: what is the value and ultimate destination of biological and medical imaging data? In the last few years, several informatics and data science technologies have matured sufficiently so that routine publication of these datasets is now possible. Participants in Global BioImaging from 15 countries and all populated continents have agreed on the need for recommendations and guidelines for the establishment of image data repositories and the formats they use for delivering data to the global scientific community. This white paper presents a shared, global view of criteria for these common, globally applicable guidelines and provisional proposals for open tools and resources that are available now and can provide a foundation for future development.

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