论文标题

在表面活性剂胶束自组装的模拟中,有限尺寸效果和最佳系统大小

Finite-size effects and optimal system sizes in simulations of surfactant micelle self-assembly

论文作者

Harris, Jonathan J., Pantelopulos, George A., Straub, John E.

论文摘要

水溶液中胶束的自发形成受表面活性剂的两亲性质的控制,并且由于定期使用胶束作为膜模拟物,用于蛋白质结构的表征以及药物设计和递送,实际上很有趣。我们对具有粗粒粒的马提尼酒模型中观察到的有限大小效应进行了系统的表征。在使用大型系统尺寸研究的多个粗粒溶剂模型中,在水溶液中发现了不可极化的溶剂模型,可最准确地再现100 mM DPC的SANS光谱。我们系统地研究了23个尺寸40至150 dpc系统中恒定100 mM浓度的有限尺寸效应,证实了有限尺寸的效果,以表现为平均胶束聚集数中有关热力学聚集数量的振荡,因为系统尺寸随着系统尺寸而增加,最大程度地增加了三个胶束的形成。使用多个长时间的500-DPC粗粒模拟探索了使用Martini和Charmm36在胶束尺寸分布和SANS光谱中避免有限尺寸效应的准确性,这些效果返回到CHARMM36全元原子系统。发现马提尼酒模型通常比全原子模型占据的体积更多,从而导致胶束的形成是合理的回旋半径,但聚集数较小。这项工作中介绍的有限尺寸效果和探索多尺度建模的系统表征为模拟中胶束的准确建模提供了指导。

The spontaneous formation of micelles in aqueous solutions is governed by the amphipathic nature of surfactants and is practically interesting due to the regular use of micelles as membrane mimics, for the characterization of protein structure, and for drug design and delivery. We performed a systematic characterization of the finite-size effect observed in single-component dodecylphosphocholine (DPC) micelles with the coarse-grained MARTINI model. Of multiple coarse-grained solvent models investigated using large system sizes, the non-polarizable solvent model was found to most-accurately reproduce SANS spectra of 100 mM DPC in aqueous solution. We systematically investigated the finite-size effect at constant 100 mM concentration in 23 systems of sizes 40 to 150 DPC, confirming the finite-size effect to manifest as an oscillation in the mean micelle aggregation number about the thermodynamic aggregation number as the system size increases, mostly diminishing once the system supports formation of three micelles. The accuracy of employing a multiscale simulation approach to avoid finite-size effects in the micelle size distribution and SANS spectra using MARTINI and CHARMM36 was explored using multiple long timescale 500-DPC coarse-grained simulations which were back-mapped to CHARMM36 all-atom systems. It was found that the MARTINI model generally occupies more volume than the all-atom model, leading to the formation of micelles that are of a reasonable radius of gyration, but are smaller in aggregation number. The systematic characterization of the finite-size effect and exploration of multiscale modeling presented in this work provides guidance for the accurate modeling of micelles in simulations.

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