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The gravitational waves from the binary neutron star merger GW170817 were accompanied by a multi-wavelength electromagnetic counterpart, which confirms the association of the merger with a short gamma-ray burst (sGRB). The afterglow observations implied that the event was accompanied by a narrow, $\sim 5~$deg, and powerful, $\sim 10^{50}$ erg, jet. We study the propagation of a Poynting flux-dominated jet within the merger ejecta (kinematic, neutrino-driven and MRI turbulence-driven) of a neutrino-radiation-GR-MHD simulation of two coalescing neutron stars. We find that the presence of a post-merger low-density/low-pressure polar cavity, that arose due to angular momentum conservation, is crucial to let the jet break out. At the same time the ejecta collimates the jet to a narrow opening angle. The collimated jet has a narrow opening angle of $\sim 4$-$7$ deg and an energy of $10^{49}$-$10^{50}~$erg, in line with the observations of GW170817 and other sGRBs.